PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479664
Common NameARALYDRAFT_479664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 1132aa    MW: 127503 Da    PI: 8.6548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479664genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e+++++ +++G++ Wk++a+ +   R+++++
           479664 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81
                     6*******************.********9.9999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.31E-104292IPR009057Homeodomain-like
SMARTSM007172.0E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-54682IPR009057Homeodomain-like
PfamPF002491.7E-74681IPR001005SANT/Myb domain
CDDcd001673.34E-54789No hitNo description
SMARTSM011354.7E-61608709IPR033471DIRP domain
PfamPF065846.1E-30608707IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MAPSRSKKSK YKKKPRAKAI SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGIE TPRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGFMPSL KKRRTETVPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG  300
RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG  360
KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK  420
AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKV  480
REDVLKDELA ASSKVIEPCN NKGIGEENKP VGRGKRSASI RNSHEKKSVK PHDRTSSSNN  540
IVEEDESAPS NAVIKKQVNL PTKVRSRRKI VTEKPLTIDD GKISETLEKF SHYTSSFRAR  600
RWCLFEWFYS AIDYPWFARQ EFVEYLDHVG LGHVPRLTRV EWGVIRSSLG KPRRFSEQFL  660
KEEKEKLYLY RDSVRKHYDE LNTGMREGLP MDLARPLNVS QRVISLHPKS REIHDGSVLT  720
VDHCRYRIQF DHPELGVEFV KDTECMPLNP LENMPASLAR HYAFSNYNIQ NPVEEKMHER  780
AKESMLEGYS KLSCETGRLL PSPNYNVSNS LKQEKVDISS SNPQAQDGVD EALDLQLFNS  840
QPSSIGHIQA READVQALSE LTRALDKKEL VLRELKCMND EVVESQKDGH NALKDSESFK  900
KQYAAVLFQL SEINEQVSLA LLGLRQRNTY QENVPYASTK RMNKSGEPDG QLTYVDNYVS  960
DTNGFHVSEI VESSRIKARK MVYRAVQALA LLRKDENNNV NMEEAIDFVN NQLSIDQTEG  1020
SSVQQTQGAQ DQRLPSTPNP PSSTPANDSH LNPPDQNDLQ IPSELVSRCM ATLLMIQKCT  1080
ERQFPPSEVA QVLDSAVASL QPCCSQNLPI YTEIQKCMGI IRNQILALVP S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5834970.0AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885439.10.0always early protein 3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLD7L0S70.0D7L0S7_ARALL; Always early protein 3
STRINGfgenesh2_kg.3__2365__AT3G21430.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding